KIAM Main page Web Library  •  Publication Searh   

KIAM Preprint  91, Moscow, 2015
Authors: Batsyn M.V., Kalyagin V.A., Tulyakov D. N.
An efficient approach to the protein structure alignment problem
The Protein Structure Alignment Problem (PSAP) consists in finding the best alignment of two proteins defined by their primary structures. In this paper we present an efficient algorithm for the PSAP. The computational results are provided for the popular Skolnick test set of 40 proteins and show that the suggested algorithm is more efficient than one of the fastest PSAP solvers the ACF algorithm by Malod-Dognin et al. (2010).
protein structure alignment, branch-and-bound algorithm
Publication language: english,  pages: 15
Research direction:
Programming, parallel computing, multimedia
English source text:
List of publications citation:
Export link to publication in format:   RIS    BibTeX
View statistics (updated once a day)
over the last 30 days 3 (-4), total hit from 01.09.2019 37
About authors:
  • Batsyn M.V., 
  • Kalyagin V.A., 
  • Tulyakov Dmitriy Nikolaevich,  KIAM RAS